Newt: A comprehensive web-based tool for viewing, constructing and analyzing biological maps

Hasan Balci; Metin Can Siper; Nasim Saleh; Ilkin Safarli; Ludovic Roy; Merve Kilicarslan; Rumeysa Ozaydin; Alexander Mazein; Charles Auffray; Özgün Babur; Emek Demir; Ugur Dogrusoz

doi:10.1093/bioinformatics/btaa850

Newt: A comprehensive web-based tool for viewing, constructing and analyzing biological maps

Hasan Balci
, Metin Can Siper
, Nasim Saleh
, Ilkin Safarli
, Ludovic Roy
, Merve Kilicarslan
, Rumeysa Ozaydin
, Alexander Mazein
, Charles Auffray
, Özgün Babur
, Emek Demir
, Ugur Dogrusoz^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › Research › peer-review

27 Citations (Scopus)

Abstract

Motivation: Visualization of cellular processes and pathways is a key recurring requirement for effective biological data analysis. There is a considerable need for sophisticated web-based pathway viewers and editors operating with widely accepted standard formats, using the latest visualization techniques and libraries. Results: We developed a web-based tool named Newt for viewing, constructing and analyzing biological maps in standard formats such as SBGN, SBML and SIF.

Original language	English
Pages (from-to)	1475-1477
Number of pages	3
Journal	Bioinformatics
Volume	37
Issue number	10
DOIs	https://doi.org/10.1093/bioinformatics/btaa850
Publication status	Published - 15 May 2021
Externally published	Yes

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10.1093/bioinformatics/btaa850

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title = "Newt: A comprehensive web-based tool for viewing, constructing and analyzing biological maps",

abstract = "Motivation: Visualization of cellular processes and pathways is a key recurring requirement for effective biological data analysis. There is a considerable need for sophisticated web-based pathway viewers and editors operating with widely accepted standard formats, using the latest visualization techniques and libraries. Results: We developed a web-based tool named Newt for viewing, constructing and analyzing biological maps in standard formats such as SBGN, SBML and SIF.",

author = "Hasan Balci and Siper, \{Metin Can\} and Nasim Saleh and Ilkin Safarli and Ludovic Roy and Merve Kilicarslan and Rumeysa Ozaydin and Alexander Mazein and Charles Auffray and {\"O}zg{\"u}n Babur and Emek Demir and Ugur Dogrusoz",

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doi = "10.1093/bioinformatics/btaa850",

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T2 - A comprehensive web-based tool for viewing, constructing and analyzing biological maps

AU - Balci, Hasan

AU - Siper, Metin Can

AU - Saleh, Nasim

AU - Safarli, Ilkin

AU - Roy, Ludovic

AU - Kilicarslan, Merve

AU - Ozaydin, Rumeysa

AU - Mazein, Alexander

AU - Auffray, Charles

AU - Babur, Özgün

AU - Demir, Emek

AU - Dogrusoz, Ugur

PY - 2021/5/15

Y1 - 2021/5/15

N2 - Motivation: Visualization of cellular processes and pathways is a key recurring requirement for effective biological data analysis. There is a considerable need for sophisticated web-based pathway viewers and editors operating with widely accepted standard formats, using the latest visualization techniques and libraries. Results: We developed a web-based tool named Newt for viewing, constructing and analyzing biological maps in standard formats such as SBGN, SBML and SIF.

AB - Motivation: Visualization of cellular processes and pathways is a key recurring requirement for effective biological data analysis. There is a considerable need for sophisticated web-based pathway viewers and editors operating with widely accepted standard formats, using the latest visualization techniques and libraries. Results: We developed a web-based tool named Newt for viewing, constructing and analyzing biological maps in standard formats such as SBGN, SBML and SIF.

UR - https://www.scopus.com/pages/publications/85108386461

U2 - 10.1093/bioinformatics/btaa850

DO - 10.1093/bioinformatics/btaa850

M3 - Article

C2 - 33010165

AN - SCOPUS:85108386461

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VL - 37

SP - 1475

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JO - Bioinformatics

JF - Bioinformatics

IS - 10

ER -

Newt: A comprehensive web-based tool for viewing, constructing and analyzing biological maps

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