Newt: A comprehensive web-based tool for viewing, constructing and analyzing biological maps

Hasan Balci; Metin Can Siper; Nasim Saleh; Ilkin Safarli; Ludovic Roy; Merve Kilicarslan; Rumeysa Ozaydin; Alexander Mazein; Charles Auffray; Özgün Babur; Emek Demir; Ugur Dogrusoz

doi:10.1093/bioinformatics/btaa850

Newt: A comprehensive web-based tool for viewing, constructing and analyzing biological maps

Hasan Balci, Metin Can Siper, Nasim Saleh, Ilkin Safarli, Ludovic Roy, Merve Kilicarslan, Rumeysa Ozaydin, Alexander Mazein, Charles Auffray, Özgün Babur, Emek Demir, Ugur Dogrusoz^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › Research › peer-review

22 Citations (Scopus)

Abstract

Motivation: Visualization of cellular processes and pathways is a key recurring requirement for effective biological data analysis. There is a considerable need for sophisticated web-based pathway viewers and editors operating with widely accepted standard formats, using the latest visualization techniques and libraries. Results: We developed a web-based tool named Newt for viewing, constructing and analyzing biological maps in standard formats such as SBGN, SBML and SIF.

Original language	English
Pages (from-to)	1475-1477
Number of pages	3
Journal	Bioinformatics
Volume	37
Issue number	10
DOIs	https://doi.org/10.1093/bioinformatics/btaa850
Publication status	Published - 15 May 2021
Externally published	Yes

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10.1093/bioinformatics/btaa850

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abstract = "Motivation: Visualization of cellular processes and pathways is a key recurring requirement for effective biological data analysis. There is a considerable need for sophisticated web-based pathway viewers and editors operating with widely accepted standard formats, using the latest visualization techniques and libraries. Results: We developed a web-based tool named Newt for viewing, constructing and analyzing biological maps in standard formats such as SBGN, SBML and SIF.",

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AU - Balci, Hasan

AU - Siper, Metin Can

AU - Saleh, Nasim

AU - Safarli, Ilkin

AU - Roy, Ludovic

AU - Kilicarslan, Merve

AU - Ozaydin, Rumeysa

AU - Mazein, Alexander

AU - Auffray, Charles

AU - Babur, Özgün

AU - Demir, Emek

AU - Dogrusoz, Ugur

PY - 2021/5/15

Y1 - 2021/5/15

N2 - Motivation: Visualization of cellular processes and pathways is a key recurring requirement for effective biological data analysis. There is a considerable need for sophisticated web-based pathway viewers and editors operating with widely accepted standard formats, using the latest visualization techniques and libraries. Results: We developed a web-based tool named Newt for viewing, constructing and analyzing biological maps in standard formats such as SBGN, SBML and SIF.

AB - Motivation: Visualization of cellular processes and pathways is a key recurring requirement for effective biological data analysis. There is a considerable need for sophisticated web-based pathway viewers and editors operating with widely accepted standard formats, using the latest visualization techniques and libraries. Results: We developed a web-based tool named Newt for viewing, constructing and analyzing biological maps in standard formats such as SBGN, SBML and SIF.

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JF - Bioinformatics

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ER -

Newt: A comprehensive web-based tool for viewing, constructing and analyzing biological maps

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