Molecular basis of promiscuous chemokine binding and structural mimicry at the C-X-C chemokine receptor, CXCR2

  • Shirsha Saha
  • , Fumiya K. Sano
  • , Saloni Sharma
  • , Manisankar Ganguly
  • , Sudha Mishra
  • , Annu Dalal
  • , Hiroaki Akasaka
  • , Takaaki A. Kobayashi
  • , Nashrah Zaidi
  • , Divyanshu Tiwari
  • , Nabarun Roy
  • , Manish K. Yadav
  • , Nilanjana Banerjee
  • , Sayantan Saha
  • , Samanwita Mohapatra
  • , Yuzuru Itoh
  • , Andy Chevigné
  • , Ramanuj Banerjee*
  • , Wataru Shihoya*
  • , Osamu Nureki*
  • Arun K. Shukla*
*Corresponding author for this work

Research output: Contribution to journalArticleResearchpeer-review

4 Citations (Scopus)

Abstract

Selectivity of natural agonists for their cognate receptors is a hallmark of G-protein-coupled receptors (GPCRs); however, this selectivity often breaks down at the chemokine receptors. Chemokines often display promiscuous binding to chemokine receptors, but the underlying molecular determinants remain mostly elusive. Here, we perform a comprehensive transducer-coupling analysis, testing all known C-X-C chemokines on every C-X-C type chemokine receptor to generate a global fingerprint of the selectivity and promiscuity encoded within this system. Taking lead from this, we determine cryoelectron microscopy (cryo-EM) structures of the most promiscuous receptor, C-X-C chemokine receptor 2 (CXCR2), in complex with several chemokines. These structural snapshots elucidate the details of ligand-receptor interactions, including structural motifs, which are validated using mutagenesis and functional experiments. We also observe that most chemokines position themselves on CXCR2 as a dimer while CXCL6 exhibits a monomeric binding pose. Taken together, our findings provide the molecular basis of chemokine promiscuity at CXCR2 with potential implications for developing therapeutic molecules.

Original languageEnglish
Pages (from-to)976-988.e9
Number of pages23
JournalMolecular Cell
Volume85
Issue number5
DOIs
Publication statusPublished - 6 Mar 2025

Keywords

  • biased signaling
  • chemokine receptors
  • cryo-EM
  • dimerization
  • drug discovery
  • GPCRs
  • ligand promiscuity
  • signal transduction
  • structural mimicry
  • β-arrestin

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