Longitudinal Urinary Protein Variability in Participants of the Space Flight Simulation Program

Nina A. Khristenko, Irina M. Larina, Bruno Domon*

*Corresponding author for this work

    Research output: Contribution to journalArticleResearchpeer-review

    23 Citations (Scopus)

    Abstract

    Urine is a valuable material for the diagnosis of renal pathologies and to investigate the effects of their treatment. However, the variability in protein abundance in the context of normal homeostasis remains a major challenge in urinary proteomics. In this study, the analysis of urine samples collected from healthy individuals, rigorously selected to take part in the MARS-500 spaceflight simulation program, provided a unique opportunity to estimate normal concentration ranges for an extended set of urinary proteins. In order to systematically identify and reliably quantify peptides/proteins across a large sample cohort, a targeted mass spectrometry method was developed. The performance of parallel reaction monitoring (PRM) analyses was improved by implementing tight control of the monitoring windows during LC-MS/MS runs, using an on-the-fly correction routine. Matching the experimentally obtained MS/MS spectra with reference fragmentation patterns allowed dependable peptide identifications to be made. Following optimization and evaluation, the targeted method was applied to investigate protein abundance variability in 56 urine samples, collected from six volunteers participating in the MARS-500 program. The intrapersonal protein concentration ranges were determined for each individual and showed unexpectedly high abundance variation, with an average difference of 1 order of magnitude.

    Original languageEnglish
    Pages (from-to)114-124
    Number of pages11
    JournalJournal of Proteome Research
    Volume15
    Issue number1
    DOIs
    Publication statusPublished - 4 Jan 2016

    Keywords

    • Targeted proteomics
    • normal protein concentration
    • quantification
    • spectral library
    • urine

    Fingerprint

    Dive into the research topics of 'Longitudinal Urinary Protein Variability in Participants of the Space Flight Simulation Program'. Together they form a unique fingerprint.

    Cite this